References

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   Cited on: Electrophysiology
2. Mitzdorf U (1985). Current source-density method and application in cat cerebral cortex: investigation of evoked potentials and EEG phenomena. Physiol Rev 65(1):37–100. doi:10.1152/physrev.1985.65.1.37
   Cited on: Electrophysiology
3. Kaiser JF (1990). On a simple algorithm to calculate the ‘energy’ of a signal. Proc. IEEE ICASSP-90, vol. 1, pp. 381–384. doi:10.1109/ICASSP.1990.115702
   Cited on: Electrophysiology
4. Mukhopadhyay S, Ray GC (1998). A new interpretation of nonlinear energy operator and its efficacy in spike detection. IEEE Trans Biomed Eng 45(2):180–187. doi:10.1109/10.661266
   Cited on: Electrophysiology
5. Quian Quiroga R, Nadasdy Z, Ben-Shaul Y (2004). Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering. Neural Comput 16(8):1661–1687. doi:10.1162/089976604774201631
   Cited on: Electrophysiology
6. Rousseeuw PJ (1987). Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. J Comput Appl Math 20:53–65. doi:10.1016/0377-0427(87)90125-7
   Cited on: Electrophysiology
7. Ester M, Kriegel H-P, Sander J, Xu X (1996). A density-based algorithm for discovering clusters in large spatial databases with noise. Proc. 2nd Int. Conf. on Knowledge Discovery and Data Mining (KDD-96), Portland, OR, pp. 226–231. AAAI Press. AAAI proceedings PDF
   Cited on: Electrophysiology
8. Hill DN, Mehta SB, Kleinfeld D (2011). Quality metrics to accompany spike sorting of extracellular signals. J Neurosci 31(24):8699–8705. doi:10.1523/JNEUROSCI.0971-11.2011
   Cited on: Electrophysiology
9. Kleinfeld D, Mitra PP, Helmchen F, Denk W (1998). Fluctuations and stimulus-induced changes in blood flow observed in individual capillaries in layers 2 through 4 of rat neocortex. Proc Natl Acad Sci USA 95(26):15741–15746. doi:10.1073/pnas.95.26.15741
   Cited on: Imaging
10. Grienberger C, Konnerth A (2012). Imaging calcium in neurons. Neuron 73(5):862–885. doi:10.1016/j.neuron.2012.02.011
    Cited on: Imaging
11. Bonner R, Nossal R (1981). Model for laser Doppler measurements of blood flow in tissue. Appl Opt 20(12):2097–2107. doi:10.1364/AO.20.002097
    Cited on: Laser Doppler flowmetry
12. Boynton GM, Engel SA, Glover GH, Heeger DJ (1996). Linear systems analysis of functional magnetic resonance imaging in human V1. J Neurosci 16(13):4207–4221. doi:10.1523/JNEUROSCI.16-13-04207.1996
    Cited on: Demo data
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14. Welch BL (1947). The generalization of ‘Student’s’ problem when several different population variances are involved. Biometrika 34(1–2):28–35. doi:10.1093/biomet/34.1-2.28
    Cited on: Response features and statistics
15. Kramer CY (1956). Extension of multiple range tests to group means with unequal numbers of replications. Biometrics 12(3):307–310. doi:10.2307/3001469
    Cited on: Response features and statistics
16. Wilcoxon F (1945). Individual comparisons by ranking methods. Biometrics Bulletin 1(6):80–83. doi:10.2307/3001968
    Cited on: Response features and statistics
17. Mann HB, Whitney DR (1947). On a test of whether one of two random variables is stochastically larger than the other. Ann Math Stat 18(1):50–60. doi:10.1214/aoms/1177730491
    Cited on: Response features and statistics
18. Kruskal WH, Wallis WA (1952). Use of ranks in one-criterion variance analysis. J Am Stat Assoc 47(260):583–621. doi:10.1080/01621459.1952.10483441
    Cited on: Response features and statistics
19. Butterworth S (1930). On the theory of filter amplifiers. Experimental Wireless and the Wireless Engineer 7:536–541.
    Cited on: Laser Doppler flowmetry
20. Okabe M, Ito K (2008). Color Universal Design (CUD): how to make figures and presentations that are friendly to colorblind people. Web page (first published 2002). jfly.uni-koeln.de/color
    Cited on: Response features and statistics
21. Rübel O, Tritt A, Ly R, Dichter BK, Ghosh S, Niu L, Baker P, Soltesz I, Ng L, Svoboda K, Frank L, Bouchard KE (2022). The Neurodata Without Borders ecosystem for neurophysiological data science. eLife 11:e78362. doi:10.7554/eLife.78362
    Cited on: File formats
22. Intan Technologies. RHD2000 Application Note: Data File Formats. Technical documentation. intantech.com
    Cited on: File formats
23. Open Ephys. Binary Format. Open Ephys GUI documentation. open-ephys.github.io
    Cited on: File formats
24. Otsu N (1979). A threshold selection method from gray-level histograms. IEEE Trans Syst Man Cybern 9(1):62–66. doi:10.1109/TSMC.1979.4310076
    Cited on: Imaging
25. Pettersen KH, Devor A, Ulbert I, Dale AM, Einevoll GT (2006). Current-source density estimation based on inversion of electrostatic forward solution: effects of finite extent of neuronal activity and conductivity discontinuities. J Neurosci Methods 154(1–2):116–133. doi:10.1016/j.jneumeth.2005.12.005
    Cited on: Electrophysiology
26. Potworowski J, Jakuczun W, Łęski S, Wójcik D (2012). Kernel current source density method. Neural Comput 24(2):541–575. doi:10.1162/NECO_a_00236
    Cited on: Electrophysiology
27. Mauchly JW (1940). Significance test for sphericity of a normal n-variate distribution. Ann Math Stat 11(2):204–209. doi:10.1214/aoms/1177731915
    Cited on: Response features and statistics
28. Greenhouse SW, Geisser S (1959). On methods in the analysis of profile data. Psychometrika 24(2):95–112. doi:10.1007/BF02289823
    Cited on: Response features and statistics
29. Huynh H, Feldt LS (1976). Estimation of the Box correction for degrees of freedom from sample data in randomized block and split-plot designs. J Educ Stat 1(1):69–82. doi:10.3102/10769986001001069
    Cited on: Response features and statistics
30. Holm S (1979). A simple sequentially rejective multiple test procedure. Scand J Stat 6(2):65–70. JSTOR 4615733
    Cited on: Response features and statistics
31. Friedman M (1937). The use of ranks to avoid the assumption of normality implicit in the analysis of variance. J Am Stat Assoc 32(200):675–701. doi:10.1080/01621459.1937.10503522
    Cited on: Response features and statistics

Some methods in the toolbox have no citation yet (for example FFT phase correlation, the Hampel filter and the local correlation image); adding verified references is an open item in the roadmap.